PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G281600.1
Common NameB456_004G281600, LOC105793751
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 240aa    MW: 26521.5 Da    PI: 4.6597
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G281600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-184494155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr +  +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++++g
  Gorai.004G281600.1 44 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTYSTPEMAARAHDVAALSIKG 94
                        68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-134494IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2145103IPR016177DNA-binding domain
PROSITE profilePS5103223.05145102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3145103IPR001471AP2/ERF domain
SMARTSM003802.0E-3545108IPR001471AP2/ERF domain
PRINTSPR003675.9E-104657IPR001471AP2/ERF domain
CDDcd000183.16E-3246104No hitNo description
PRINTSPR003675.9E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MADSPNSESE LITRSNKSYD GKQRSGTDPV PEKRRPRDSI SKHPVYRGVR MRAWGKWVSE  60
IREPRKKSRI WLGTYSTPEM AARAHDVAAL SIKGNSAILN FPELAELLPR PVSNSPRDVQ  120
AAAAKAAAME FLSNNTNNNV DATTLFLSSS SSSSMNMDDV STPEELSQIV ELPSLGTSYE  180
SVESGTEFVC MDPVDGWLLN PSGMPWYDED NNGYFGDEIP MQMQENTITN GFSPLLWNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-1646102360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7801900.0KP780190.1 Gossypium hirsutum C-repeat binding factor 7 (CBF7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478047.11e-178PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD35e-63DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D2PJ451e-178A0A0D2PJ45_G
STRINGVIT_11s0016g03350.t011e-70(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-60ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]